Example Analyses
Compare orthologs in multiple genomes
Obtain a list of all protein-coding genes found in Pseudomonas fluorescens Pf-5 which are also present in Pseudomonas aeruginosa PA01 but which are absent from other specified Pseudomonas genomes.
Index genome:
Pseudomonas fluorescens Pf-5
Comparison genomes:
| Pseudomonas aeruginosa PAO1 |  |
| Pseudomonas fluorescens A506 |  |
| Pseudomonas fluorescens F113 | |
| Pseudomonas fluorescens Pf0-1 | |
| Pseudomonas fluorescens SBW25 | |
| Pseudomonas stutzeri ATCC 17588 = LMG 11199 | |
| Pseudomonas stutzeri CCUG 29243 | |
| Pseudomonas stutzeri DSM 10701 | |
| Pseudomonas stutzeri DSM 4166 | |
Obtain orthologs between two genomes
Obtain orthologs in Bacillus subtilis subsp. subtilis str. 168 and Bacillus anthracis str. A0248, showing gene context.
Obtain orthologs for a single gene
View orthologs of PA0958 from Pseudomonas aeruginosa PAO1 in all isolates, showing gene context.
View orthologs of RefSeq accession WP_001258828.1 in Yersinia Pestis isolates, showing gene context.
This is a 2-step search because this RefSeq accession is associated with more than one isolate. The results page shows a list of genes. Click the 'Get Orthologs' link on your isolate of choice to display the list of orthologs present in Yersinia Pestis isolates.